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The following contains an exhaustive list of the publications and preprints which my laboratory and I have participated in. It may be sometimes out-of-date. For the latest updates, please refer to my google scholar profile.


  • Miller HE, Ilieva M, Bishop AJR, Uchida S. Current Status of Epitranscriptomic Marks Affecting lncRNA Structures and Functions. Noncoding RNA. 2022 Mar 28;8(2):23. doi: 10.3390/ncrna8020023. PMID: 35447886; PMCID: PMC9025719.
  • Ilieva M, Miller HE, Agarwal A, Paulus GK, Madsen JH, Bishop AJR, Kauppinen S, Uchida S. FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis. Noncoding RNA. 2022 Jan 28;8(1):13. doi: 10.3390/ncrna8010013. PMID: 35202087; PMCID: PMC8877069.


  • Brown AD, Greenman S, Claybon AB, Bishop AJR. BRCA2 Promotes Spontaneous Homologous Recombination In Vivo. Cancers (Basel). 2021 Jul 21;13(15):3663. doi: 10.3390/cancers13153663. PMID: 34359565; PMCID: PMC8345144.
  • Gonçalves RM, Delgobo M, Agnes JP, das Neves RN, Falchetti M, Casagrande T, Garcia APV, Vieira TC, Somensi N, Bruxel MA, Mendes DAGB, Rafacho A, Báfica A, Gelain DP, Moreira JCF, Cassali GD, Bishop AJR, Zanotto-Filho A. COX-2 promotes mammary adipose tissue inflammation, local estrogen biosynthesis, and carcinogenesis in high-sugar/fat diet treated mice. Cancer Lett. 2021 Apr 1;502:44-57. doi: 10.1016/j.canlet.2021.01.003. Epub 2021 Jan 9. PMID: 33429006.
  • Sybouts EH, Brown AD, Falcon-Cantrill MG, Thomas MH, DeNapoli T, Voeller J, Chen Y, Tomlinson GE, Bishop AJR. Bloom syndrome in a Mexican American family with rhabdomyosarcoma: evidence of a Mexican founder mutation. Cold Spring Harb Mol Case Stud. 2021 Apr 8;7(2):a005751. doi: 10.1101/mcs.a005751. PMID: 33832920; PMCID: PMC8040734.
  • Delgobo M, Gonçalves RM, Delazeri MA, Falchetti M, Zandoná A, Nascimento das Neves R, Almeida K, Fagundes AC, Gelain DP, Fracasso JI, Macêdo GB, Priori L, Bassani N, Bishop AJR, Forcelini CM, Moreira JCF, Zanotto-Filho A. Thioredoxin reductase-1 levels are associated with NRF2 pathway activation and tumor recurrence in non-small cell lung cancer. Free Radic Biol Med. 2021 Oct 19;177:58-71. doi: 10.1016/j.freeradbiomed.2021.10.020. Epub ahead of print. PMID: 34673143.
  • Miller HE, Bishop AJR. Correlation AnalyzeR: functional predictions from gene co-expression correlations. BMC Bioinformatics. 2021 Apr 20;22(1):206. doi: 10.1186/s12859-021-04130-7. PMID: 33879054; PMCID: PMC8056587.
  • Miller HE, Montemayor D, Abdul J, et al. Quality-controlled R-loop meta-analysis reveals the characteristics of R-Loop consensus regions. bioRxiv; 2021. DOI: 10.1101/2021.11.01.466823.
  • Miller HE, Montemayor D, Li J, et al. Exploration and analysis of R-loop mapping data with RLBase. bioRxiv; 2021. DOI: 10.1101/2021.11.01.466854.



  • Lambo S, Gröbner SN, Rausch T, Waszak SM, Schmidt C, Gorthi A, Romero JC, Mauermann M, Brabetz S, Krausert S, Buchhalter I, Koster J, Zwijnenburg DA, Sill M, Hübner JM, Mack N, Schwalm B, Ryzhova M, Hovestadt V, Papillon-Cavanagh S, Chan JA, Landgraf P, Ho B, Milde T, Witt O, Ecker J, Sahm F, Sumerauer D, Ellison DW, Orr BA, Darabi A, Haberler C, Figarella-Branger D, Wesseling P, Schittenhelm J, Remke M, Taylor MD, Gil-da-Costa MJ, Łastowska M, Grajkowska W, Hasselblatt M, Hauser P, Pietsch T, Uro-Coste E, Bourdeaut F, Masliah-Planchon J, Rigau V, Alexandrescu S, Wolf S, Li XN, Schüller U, Snuderl M, Karajannis MA, Giangaspero F, Jabado N, von Deimling A, Jones DTW, Korbel JO, von Hoff K, Lichter P, Huang A, Bishop AJR, Pfister SM, Korshunov A, Kool M. The molecular landscape of ETMR at diagnosis and relapse. Nature. 2019 Dec;576(7786):274-280. doi: 10.1038/s41586-019-1815-x. Epub 2019 Dec 4. PubMed PMID: 31802000; PubMed Central PMCID: PMC6908757.












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